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Elastic property of single double-stranded DNA molecules: Theoretical study and comparison with experiments

机译:单链双链DNa分子的弹性性质:理论性质   研究和实验比较

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摘要

This paper aims at a comprehensive understanding on the novel elasticproperty of double-stranded DNA (dsDNA) discovered very recently throughsingle-molecule manipulation techniques. A general elastic model fordouble-stranded biopolymers is proposed and a new structural parameter calledthe folding angle $\phi$ is introduced to characterize their deformations. Themechanical property of long dsDNA molecules is then studied based on thismodel, where the base-stacking interactions between DNA adjacent nucleotidebasepairs, the steric effects of basepairs, and the electrostatic interactionsalong DNA backbones are taken into account. Quantitative results are obtainedby using path integral method, and excellent agreement between theory and theobservations reported by five major experimental groups are attained. Thestrong intensity of the base-stacking interactions ensures the structuralstability of DNA, while the short-ranged nature of such interactions makesexternally-stimulated large structural fluctuations possible. The entropicelasticity, highly extensibility, and supercoiling property of DNA are allclosely related to this account. The present work also suggests the possibilitythat negative torque can induce structural transitions in highly extended DNAfrom right-handed B-form to left-handed configurations similar with Z-formconfiguration. Some formulae concerned with the application of path integralmethod to polymeric systems are listed in the Appendix.
机译:本文旨在全面了解最近通过单分子操作技术发现的双链DNA(dsDNA)的新型弹性性质。提出了双链生物聚合物的一般弹性模型,并引入了称为折叠角$ \ phi $的新结构参数来表征其变形。然后,基于该模型研究了长dsDNA分子的力学性能,其中考虑了DNA相邻核苷酸碱基对之间的碱基堆积相互作用,碱基对的空间效应和静电相互作用以及整个DNA骨架。采用路径积分法得到定量结果,并得到了五个主要实验组的理论与观察结果的良好吻合。碱基堆叠相互作用的强度很强,可确保DNA的结构稳定性,而这种相互作用的短时性使得外部刺激的大结构波动成为可能。 DNA的熵弹性,高度可扩展性和超螺旋性质都与此原因密切相关。目前的工作还表明负扭矩可以诱导高度延伸的DNA从右旋B型转变为类似于Z型构型的左手构型的结构转变的可能性。附录中列出了一些与将路径积分法应用于聚合物系统有关的公式。

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